PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS62935.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 252aa    MW: 27834 Da    PI: 10.1227
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS62935.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.2e-1276118754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  EPS62935.1  76 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 118
                 79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.86669118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1772136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-975118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1475124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.11E-1376122No hitNo description
Gene3DG3DSA:4.10.280.103.4E-1676130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.72E-5180241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGSLNLYPDD NSLIQFPTGF HPFGAGNPPT LFQKRAALRK KKKKKKNKNS SEGDNSDDQL  60
DSKGKSKKGM PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIDYLKELLQ  120
KIDDLSNELE SPAPGSSGAD FYPPACPVPS KIKQELISSP NGQQPTRVEV RLGEGRGVNI  180
QMFCGRRPGL LLSTLRAMDG MGLEVQQAVI SCFNSFVLDV FRAELCGDRR EDLSPEQIKA  240
VLLDSAGFHG AV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945KKKKKKK
27784ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889974.15e-90predicted protein
RefseqXP_013461649.11e-89BHLH transcriptional factor
RefseqXP_011073188.12e-89PREDICTED: transcription factor ICE1-like
SwissprotQ9LPW37e-88SCRM2_ARATH; Transcription factor SCREAM2
TrEMBLS8C8470.0S8C847_9LAMI; Uncharacterized protein
STRINGAl_scaffold_0001_13262e-89(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.16e-87bHLH family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]